Pharmaceutical and Toxicological Chemistry I

Academic Year 2023/2024 - Teacher: Agostino MARRAZZO

Expected Learning Outcomes

Educational goals: to provide the fundamental know-how used in medicinal chemistry for the “Drug Discovery”, starting from the first step of the development of the molecule until it evolve to a medication. To provide knowledge of the route of the drugs in the human body starting from the administration to the elimination “clearance” evaluating all the conditioning properties related to the interaction of drug-biophase. To provide knowledge of the main classes of active drugs in the treatment of diseases caused by infectious agents, and for each of these classes, the most representative of the components used, their physico-chemical properties and biological synthesis and structure-activity relationships.

Course Structure

MODULO A (5 CFU): the course includes 35 hours of classroom lectures (first semester).

MODULO B (5 CFU): the course includes 35 hours of classroom lectures (second semester).

Classroom attendance is mandatory. The maximum limit of absences allowed is 30% of the total hours of lessons.

Should teaching be carried out in mixed mode or remotely, it may be necessary to introduce changes with respect to previous statements, in line with the programme planned and outlined in the syllabus.

Learning assessment may also be carried out on line, should the conditions require it.

Required Prerequisites

Passing and/or good knowledge of the following 1st and 2nd year courses: General and Inorganic Chemistry, Animal Biology and Plant Biology, Molecular Biology, Human Anatomy, General and Inorganic Chemistry II, Organic Chemistry I, Microbiology and Biochemistry.

Attendance of Lessons

Attendance at the courses for enrolled students who are not out of course is compulsory. In order to be admitted to the exams, absences are allowed for no more than 30% of the total hours of lessons evaluated in all their forms of completion. Students can request total or partial exemption from the obligation to attend theory lessons for serious and justified work or health reasons. The dispensation is deliberated by the Council of the course of study.

Detailed Course Content

MODULE A – Lez. 35 h;  CFU 5

GENERAL ASPECTS          

Unity 1

Introduction. Production of drugs. Pharmaceutical research. Access ways to new drug substances.  Development phases of a new drug. Development of a drug into a pharmaceutical agent. Pre-clinic studies: chemical, analytical and galenical development, pharmacodynamics, pharmacokinetics, toxicity, carcinogenicity and mutagenicity. Clinical tests. Patent protection. Good Clinical Practice (GCP). Ethics Committee. Off-label, generic equivalent,  Me-too drugs. Innovation. Orphan drugs. Stability.

Unity 2

Phases of a drug action:

- pharmaceutical phase, administration pathways and characteristics.

- pharmacokinetic phase with absorption mechanisms, transport in the bloodstream, distribution, pathways of xenobiotic metabolism, phase I reactions (oxidation, reduction, hydrolysis), phase II (methylation, acetylation, conjugation), enzymatic inhibition and induction, elimination and excretion pathways.  Pro-drugs, advantages and combinations.  Mutual pro-drugs. Soft-drugs, advantages and soft analogues.

- pharmacodynamic phase: drug-receptor interaction, chemical bonding and theories about the drugs mechanism of action. Dose-response relationships. Antagonism.                                                

Unity 3

Haptophoric and pharmacophoric groups.  Structural features and pharmacological activity, optical and geometric isomerism, conformational isomerism and eudismic index, influence of stereoselectivity and stereospecificity on drug-receptor interaction, molecular modifications, chemical isosterism, bioisosterism classical and nonclassical bioisosteres. International drug abbreviations, DC.IT, INN, importance to monitoring  and scientific information. Pharmacosurveillance. ATC classification.

 

MODULE B – Lez. 28 h; CFU 4

SPECIFIC TOPICS

Unity 4

ANTIBIOTICS AND ANTIMICROBIAL AGENTS: general principles, classifications.

BACTERIAL CHEMOTHERAPY: antibacterial classification and mechanism of action. Bacterial  resistance.

Sulfonamides: short historical outlines, classification, action spectrum, association, mode of action, synthesis of N-heterocyclic, N-acyl and acylamino derivatives, structure-activity relationships.

- classical: sulfathiazole, sulfamethazine, sulfamethizole, sulfisomidine,sulfisoxazole.

- semiretard: sulfadiazine, sulfamethoxazole, sulfamerazine.

- retard: sulfamethoxypyridazine, sulfadimethoxine, sulfamethoxydiazine.

- ultraretard: sulfadoxine.

- topical action: sulfacetamide, sulfanilamide, sulfaguanidine, phthalylsulfathiazole, succinylsulfathiazole, sulfasalazine.

Nitrofurans: short historical outlines, activity, action spectrum, mode of action, synthesis, structure-activity relationships. Nitrofurazone, nifuroxime, nitrofurantoin, furazolidone, nifuratel.

Nitroimidazoli: short historical outlines, action spectrum, mode of action, metronidazole.

Quinolones: fluoro- and difluoroquinolones, synthesis, mode of action, structure-activity relationships.

- I generation: nalidixic acid, piromidic acid, oxolinic acid.

- II generation: pipemidic acid, cinoxacin.

- III generation: ofloxacin, norfloxacin, ciprofloxacin, enoxacin, pefloxacin mesylate.

Unity 5

ANTIMYCOBACTERIAL AGENTS: general principles, mode of action, synthesis, antimycobacterial therapy.

Diaminodiphenylsulfones: dapsone, acedapsone.

Carboxylic acids and derivatives: 4-aminosalicylic acid, isoniazid, pyrazinamide.

Thioamides: etionamide, protionamide.

Ethylenediamines: ethambutol.

Antibiotics: cycloserine, rifamycin SV, rifampicin,rifabutin, streptomycin.

Unity 6

ANTIBIOTICS: short historical outlines, production pathways: fermentation, synthesis, semisynthesis.

Beta-lactam antibiotics: structure, nomenclature, properties, synthesis, mode of action, antimicrobial spectrum, bacterial  resistance.

penicillins: stability, acid lability, acid stability, production of 6-APA, structure-activity relationships, depot penicillins, penicillinase-stable penicillins, broad-spectrum penicillins, antipseudomonas penicillins, ureidopenicillins.

Unity 7

- Cefalosphorins: short historical outlines, activity, production of cephalosporin C, production of 7-ACA, structure-activity relationships, classification. I generation, cefacetrile, cefalotin, cefapirin, cefaloridine; perorally cephalosporins, cefalexin, cefaclor; II generation, cefamandole, cefuroxime, cephamycins, cefoxitin; III generation, cefotaxime, IV generation, cefpirome, cefepime, cefclidine.

- 2-penem: structural features

- carbapenem: structural features, antimicrobial spectrum, thienamycin, imipenem.

- monobactams: chemical and structural features, synthesis, aztreonam, carumonam

Unity 8

Tetracyclines: therapeutic and structural features, classification, structure-activity relationships, chemical properties, stability, synthesis, oxytetracycline, metacycline, doxycycline, minocycline, prodrugs, rolitetracycline, lymecycline, mepicycline.

Amphenicols: therapeutic features, synthesis, structure-activity relationships, Chloramphenicol,  thiamphenicol.

Unity 9

Macrolide antibiotics: structural features, classification, mode of action, erythromycin, roxithromycin, azithromycin, oleandomycin, spiramycin.

Carbohydratic antibiotics: lincosamides, lincomycin, structure-activity relationships, clindamycin.

Aminoglycosides: structural and therapeutic features, bacterial  resistance, kanamycin B, streptomycin, amikacin, synthesis, gentamicin.

Ansamycins: rifamycins, mode and spectrum of action, structural features, structure-activity relationships, rifampicin, rifapentin.

Polypeptides: classification, mode of action, bacitracin.

Lipopeptides: mode of action, polymyxin, colistin.

Unity 10

ANTIFUNGAL AGENTS: pathogenicity of fungus, mycosis, therapy, classification.

Antibiotics: griseofulvin, nystatin, anphotericin.

Imidazoles: therapeutic features, mode of action and synthesis, clotrimazole, miconazole, econazole, isoconazole, ketoconazole.

Triazoles: terconazole, fluconazole.

Unity 11

ANTIVIRAL AGENTS: features of viruses, viral replication steps, antiviral therapy, chemoterapy, mode of action, spectrum and synthesis.

Thiosemicarbazones: methisazone.

Aminoadamantanes: amantadine, tromantadine.

Nucleosides: pyrimidine, azole, purine analogues, idoxuridine, cytarabine, ribavirin, acyclovir, gancyclovir.

NEW THERAPEUTIC APPROACHES FOR THE TREATMENT OF HIV INFECTIONS: co-receptor inhibitors, fusion inhibitors, nucleoside reverse transcriptase inhibitors (NRTIs), non-nucleoside reverse transcriptase inhibitors (NNRTIs), integrase inhibitors, protease inhibitors.

DRUGS FOR HCV INFECTIONS: NS3 / 4A protease inhibitors, NS5A phosphoprotein inhibitors, NS5B polymerase inhibitors, therapeutic combinations.

Unity 12

CANCER CHEMOTHERAPY: cancer generalities, classification, carcinogenesis, treatment of cancer, alkylating agents, cisplatin, carboplatin; procarbazine, antibiotics, antimetabolites, Vinca alkaloids.

NEW STRATEGIES IN ANTITUMORAL CHEMOTHERAPY: kinase, histone deacetylases, farnesil transferase inhibitors.

Textbook Information

  1. Teaching material provided by the teacher: http://studium.unict.it/dokeos/2016/index.php?category=409a732f04b0
  2. FOYE’S PRINCIPI DI CHIMICA FARMACEUTICA - VI ediz. italiana (2014) - Piccin.
  3. PATRICK G.L. - Introduzione alla Chimica Farmaceutica – II ed. (2010) - EdiSES.
  4. Wilson & Gisvold -Chimica Farmaceutica- I Ed. (2014) - Casa Editrice Ambrosiana
  5. Gasco A. Gualtieri F. Chimica Farmaceutica- I Ed. (2015) - Casa Editrice Ambrosiana
  6. G. GRECO - Farmacocinetica e Farmacodinamica su basi chimico-fisiche - (2007) – Loghìa
  7. G. GRECO – Farmaci antibatterici - (2009) - Loghìa

Letture consigliate:

- BURGER’S - Medicinal Chemistry and Drug Discovery, vol I - Ed. M.E. Wolff - J. Wiley & Sons.

Course Planning

 SubjectsText References
1MODULO A - PARTE GENERALE (vedi contenuti del corso - parte generale)1. Materiale Didattico fornito dal docente: http://studium.unict.it/dokeos/2019/
2MODULO B - PARTE SISTEMATICA(vedi contenuti del corso - parte sistematica)1. Materiale Didattico fornito dal docente: http://studium.unict.it/dokeos/2019/
3Per il superamento dell’esame non sono previsti argomenti minimi irrinunciabili; vengono valutate le conoscenze di base degli argomenti in programmaIl docente fornisce il materiale necessario per lo studio degli argomenti trattati in aula attraverso la piattaforma STUDIUM

Learning Assessment

Learning Assessment Procedures

The verification of learning can also be carried out electronically, should the conditions require it.

Examples of frequently asked questions and / or exercises

Pharma-general 1       Surname …………………………………………………… NAme …………………………………………… date ……………………

The absorption of a drug from the gastrointestinal tract is governed by

(1) extension of the affected area

(2) blood flow to the site of absorption

(3) physical state of the drug

(4) drug concentration

(5) all factors indicated


Which of the following indications most closely corresponds to the definition of "pro-drug": a drug

(1) which is administered in place of another drug equivalent to it

(2) which has more lasting effects over time

(3) considered a placebo

(4) that it is metabolically transformed before it can carry out its action

(5) which has the same pharmacological activity as another drug


Which of the following indications most closely corresponds to the definition of a "delay" drug? A drug

(1) whose action begins after a certain time after administration

(2) which, regardless of the onset of action, has more prolonged effects

 (3) which has poor fat solubility

(4) which has high water solubility

(5) that it is metabolically transformed before it can carry out its action