CHIMICA FARMACEUTICA E TOSSICOLOGICA 2

The course aims to provide knowledge of the principal classes of drugs interacting with membrane receptors, intracellular receptors, enzymes and ionic channels. The course deals with the design, mode of action, Structure-Activity Relationships (SARs), and metabolic fate of drugs. During the course a number of examples of industrial production of therapeutics are presented and discussed.

 

In particular, with reference to the five Dublin Descriptors, upon completion of the course students will:

• Knowledge and understanding

-        have knowledge and understanding of name, structure, design, synthesis, physicochemical properties, structure of the biological target, mode of action, SARs and metabolic transformations of drugs belonging to classes object of the course;

• Applying knowledge and understanding

-         be able to apply knowledge and understanding in prediction of physicochemical properties of a structure, in discussion of their importance for the interaction with the target  and for the expression of the biological properties, including metabolism (for drugs treated during the course and for analogues);

• Making judgements

-        be able in making proper judgements and comments about SARs, pharmacologic action, metabolism and eventual related toxicity of drugs belonging to classes object of the course;

• Communication skills

-        have skills in proper communication of issues presented during the course, answering to question with proper technical language;

• Learning skills

-        have learning skills in the inference of general rules (e. g.: structure-activity relationships in a drug class) from single cases, in independently searching and critically assessing information on drug structure and properties, how to manage and enlarge his/her own wealth of knowledge about medicinal chemistry.

The course activities (9 ECTS, 63 hours) consist of lectures (delivery-based teaching) and in-class case studies. Students are required to actively participate in discussions regarding the topics presented, particularly the case studies (interactive teaching).

 

Should teaching be carried out in mixed mode or remotely, it may be necessary to introduce changes with respect to previous statements, according to the course content outlined in the Syllabus.

Recommended background knowledge: basic knowledge of Organic Chemistry 1, Organic Chemistry 2, Biochemistry, Pharmacology and Pharmacotherapy, and Pharmaceutical and Toxicological Chemistry 1 (general part).

Formally required prerequisites: Physical Methods in Organic Chemistry – Organic Chemistry 2, Pharmaceutical and Toxicological Chemistry 1.

Attendance is mandatory in accordance with the degree regulations of the Single-Cycle Degree Course in Pharmaceutical Chemistry and Technology. Absence is permitted for no more than 30% of the total lecture hours, evaluated across all delivery formats (https://www.dsf.unict.it/it/corsi/lm-13_ctf/regolamento-didattico).

General section.

Definition of drug. Receptors as targets of drug action. Receptors: definition, features, classification. Membrane receptors: G protein-coupled receptors, ionotropic receptors, tyrosine kinase receptors. Intracellular receptors. Definitions of agonist, partial agonist, antagonist, inverse agonist. Types of interactions and role of stereochemistry in the formation of the drug-receptor complex. Interactions between binging site and ligand. Case study 1: Interaction between Carazolol and beta2-adrenergic receptor (D. M. Rosenbaum et al. Science, 318, 1266, 2007). Case study 2: Binding mechanism between Alprenolol and beta2-adrenergic receptor (R. O. Dror et al., PNAS, 108, 13118, 2011). Enzymes as drug targets. Case study 3: Interaction between Atorvastatin and HMG-CoA reductase (E. S. Istvan, J Deisenhofer, Science, 292, 1160, 2001). Off targets: K+ hERG channels. Drug metabolism: role of the different P450 cytochrome isoforms.

 

Systematic section

Drugs acting on the cholinergic system. The parasympathetic nervous system. Structure, biosynthesis and metabolism of acetylcholine (ACh). Classification of cholinergic receptors, their tissue distribution and mechanism of signal transduction. Interaction between ACh and receptor binding site. Case 4 Study: Structure of the M2 muscarinic receptor bound to an antagonist (K. Haga et al., Nature, 482, 547, 2012). Acetylcholine: structure, conformations, SAR. Muscarinic agonists: Methacholine, Carbachol, Bethanechol, Pilocarpine, Arecoline, Oxotremorine. Muscarinic antagonists, Atropine and Scopolamine, SAR antagonists. Ipratropium bromide, Benztropine, Propanteline bromide, QNB, Trihexyphenidil, Pirenzepine, Solifenacin. Case study 5: Structure of the nicotinic a4b2 receptor (C. L. Morales-Perez et al., 538, 411, 2016). Nicotinic agonists: Nicotine, Epibatidine, Varenecline. Nicotinic antagonists: neuromuscular blockers. Decamethonium, Succinylcholine, Tubocurarine, Pancuronium, Vecuronium, Rocuronium, Atracurium, Cisacurium, Mivacurium. Acetylcholinesterase, active site and mechanism of hydrolysis. Reversible acetylcholinesterase inhibitors. Fisostigmine, Neostigmine, Pyridostigmine, Edrophonium. Tacrine, Rivastigmine, Donezepil, Galantamine. Donezepil metabolism. Organophosphorus compounds and irreversible inhibition of acetylcholinesterase. Echothiophate. Pralidoxime iodide.

 

Drugs acting on the adrenergic system. The sympathetic nervous system. Structure, biosynthesis and metabolism of Noradrenaline (NE). Classification of adrenergic receptors, their tissue distribution and mechanism of signal transduction. Interaction between NE and receptor binding site. Adrenergic agonists with phenylethylamine structure: selectivity of receptor action, SAR and therapeutic uses. Phenylephrine, Isoproterenol, Terbutaline, Dobutamine, Salbutamol, Arformeterol, Salmeterol, Indocaterol. Synthesis of Salbutamol. Alpha1-adrenergic agonists with arylimidazolinic structure: Nafazolin, Xylometazoline, Oxymetazoline. Alpha2-adrenergic agonists: Clonidine. Adrenergic antagonists: receptor selectivity, SAR and therapeutic uses. Alpha1-adrenergic antagonists: Prazosin, Terazosin, Doxazosin, Tamsulosin, Silodosin. Alpha-beta adrenergic antagonists: Labetalol, Carvedilol. Beta-adrenergic antagonists, SAR. Propranolol, Pindolol, Timolol, Nadolol. Selective beta1-adrenergic antagonists: Practolol, Acebutolol, Atenolol, Metoprolol, Betaxolol, Esmolol. Synthesis of aryloxypropanolamine derivatives. Other drugs that influence adrenergic transmission: alpha-methyltyrosine, alpha-methyldopa.

 

Drugs acting on histaminergic receptors. Antiallergic and antigastrolesive drugs. Allergies and their mediators, biosynthesis and metabolism of histamine, histamine tautomers, histamine methylated derivatives. Histaminergic receptors and their classification. Case study 6: Structure of the H1 histaminergic receptor in complex with Doxepin (T. Shimamura et al., 475, 65, 2011). First generation H1 antagonists: ethanolamine derivatives, ethylenediamine derivatives, propylamine derivatives, piperazine derivatives, tricyclic derivatives. Second generation H1 antagonists: Cetirizine, Levocetirizine, Terfenadine, Fexofenadine, Loratidine, Desloratidine, Acrivastine. Synthesis of Fexofenadine.

Peptic ulcer, gastric acid secretion, role of Helicobacter pylori. Histamine and H2 receptors. H2 antagonists, Cimetidine discovery: 4-methylhistamine, N-guanylistamine, Burinamide, Metiamide, Cimetidine synthesis and SAR; Ranitidine, Famotidine, Nizatidine, Roxatidine.

Proton pump inhibitors: mechanism of action, metabolism and synthesis of Omeprazole; Pantoprazole, Lansoprazole, Rabeprazole, Esomeprazole, Dexlansoprazole.

 

Non-steroidal anti-inflammatory drugs (NSAID). Pro-inflammatory and pro-resolution mediators. Biosynthesis of prostanoids and leukotrienes. Structure of PGH2 synthase (Cyclooxygenase, COX) and cyclooxygenase and peroxidase catalytic sites. Isoforms of PGH2 synthase: COX1 and COX2 and differences in their catalytic sites. Mechanisms of inhibition of COX. NSAID toxicity and selectivity in COX inhibition. Structural classes of NSAIDs and main SARs for each class. Salicylates: Acetylsalicylic acid (ASA), Diflunisal. Mechanism of action and metabolism of ASA. Synthesis of ASA. Aryl/heteroarylacetic acids: Indomethacin, Sulindac, Tolmetin, Zomepirac, Ketorolac, Etodolac, Diclofenac. Aryl/heteroarylpropionic acids: Ibuprofen, chiral center configuration and metabolism, Flurbiprofen, Ketoprofen, Naproxen, Nabumetone and its metabolic activation. Synthesis of Ibuprofen. Anthranilic acids: Mefenamic Acid, Flufenamic Acid, Meclofenamic Acid. Nimesulide. Oxicams: Piroxicam, Isoxicam, Tenoxicam, Lornoxicam Meloxicam, Sudoxicam. Metabolism of Meloxicam and Sudoxicam. Paracetamol: mechanism of action and metabolism. COXib: general structure and mechanism of action. Celecoxib, Etoricoxib, Rofecoxib, Valdecoxib, Lumiracoxib.

 

Drugs for Parkinson's therapy. General information on Parkinson's disease (PD) and on the involved neuronal circuits. Biosynthesis and catabolism of Dopamine. Classes of drugs in therapeutic use for PD. Levodopa and Melevodopa. Peripheral inhibitors of DOPA decarboxylase: Carbidopa and Benserazide. COMT inhibitors: Entacapone, Tolcapone, Opicapone. Irreversible MAO-B inhibitors: Selegiline, Rasagiline and the importance of the N-propargylic portion. Reversible MAO-B inhibitors: Safinamide. Dopaminergic agonists: semisynthetic derivatives of ergot alkaloids, Bromicriptine, Cabergoline. Apomorphine, Ripinirole, Rotigotine, Pramipexole. Cholinergic antagonists: Benztropine Trihexyphenidyl, Procyclidine.

 

Anxiolytic drugs. GABAergic receptor system, biosynthesis and catabolism of GABA. GABAA receptor: structure and binding sites of GABA, Benzodiazepines (BDZ), Barbiturates.

Benzodiazepines: discovery of Chlordiazepoxide and Diazepam. Synthesis of Chlordiazepoxide. BDZ SAR, pharmacological actions and BDZ classification based on duration of action. Triazolam, Alprazolam, Lorazepam, Oxazepam, Potassium clorazepate, Diazepam, Nitrazepam. Antagonists for the BDZ site: Flumazenil. BDZ metabolism. Synthesis of Diazepam and Triazolam.

Zeta drugs: Zopiclone, Zolpidem, Zaleplon.

 

Antipsychotic drugs. General information on psychotic disorders. Symptomatology and pato-physiological hypothesis (dopaminergic, serotoninergic, glutamatergic) of schizophrenia. Classification of antipsychotic drugs, structure and SAR of the main chemical classes. Typical or first generation antipsychotics. Phenothiazine derivatives: Discovery of Chlorpromazine, Trifluoperazine, Perphenazine, Fluphenazine. Structural modifications and metabolism. Long-Acting-Injectable-Antipsychotics (LAIAs): Perphenazine enanthate, Fluphenazine decanoate. Thioxanthene derivatives: structure, geometric isomerism, SAR. Chlorprothixene, Thiothixene. Butyrophenone derivatives: structure, SAR. Haloperidol, Droperidol, Pimozide. Benzamide derivatives: discovery of Sulpiride starting from Metoclopramide, Amisulpiride. Atypical or second-generation antipsychotic drugs: mechanism of action, advantages over the typical antipsychotics, side effects. Clozapine, Olanzapine, Quetiapine, Risperidone, Paliperidone, Ziprasidone. Metabolism of Olanzapine. Aripiprazole, Cariprazine, Brexpiprazole.

 

Antidepressant drugs. General information on depression, symptomatology and pato-physiological hypotheses. Main classes of antidepressant drugs in therapeutic use. Monoamine oxidase inhibitors (IMAO): Phenelzine, Tranylcypromine, Moclobemide. Tricyclic antidepressants (TCA): Structure, conformation, mechanism of action, SAR. Imipramine, Desimipramine, Clomipramine, Amitriptyline, Nortriptyline, Dothiepin. Selective serotonin reuptake inhibitors (SSRIs): Fluoxetine and its metabolism, Sertraline, Paroxetine, Fluvoxamine, Citalopram, Escitalopram. Structural features common to SSRIs. Synthesis of Fluoxetine. Dual inhibitors of serotonin and norepinephrine reuptake (SNRI): Venlafaxine, Duloxetine, metabolism of Duloxetine. Norepinephrine reuptake inhibitors (NARI): Reboxetine, Bupropion, Bupropion metabolism. Alpha2-AR receptor antagonists: Mirtazapine. Trazodone.

 

Opioid analgesics. Opium and its alkaloids, historical notes. Morphine, structure, conformation and configuration of chiral centers. Codeine, metabolism of Morphine and Codeine. Structural modifications on Morphine: Normorphine, Diacetylmorphine, 6-Acetylmorphine, Oxymorphine, Hydrocodone, Oxycodone; influence on the pharmacological activity of the substituent on the piperidine nitrogen atom: N-Phenethylmorphine, Nalorphin, Naloxone and Naltrexone. SAR for multicyclic opioids (4,5-epoxymorphinanes). General information on opioid receptors, their classification and localization. Endogenous opioid peptides: Enkephalins, Endorphins, Dinorphins. Structure of Met-enkephalin and Leu-enkephalin. Nociceptin and Endomorphins. Selectivity of opioid peptides for the different receptor subclasses. Message-Address Concept. Case study 7: Structure of the opioid receptor MOP in complex with a morphinane antagonist (A. Manglik et al., Nature, 485, 321, 2012). Stiffening of the morphine structure: Orvinols. Etorphine, Diprenorphine, Buprenorphine. Synthesis of the orvinol derivatives from Thebaine. Simplification of the morphine structure. Morphine derivatives: Levorfanol, Levallorfane, Dextromethorphan as antitussive agent. Benzomorphane derivatives: Metazocine, Phenazocine, Pentazocine. 4-Phenylpiperidine derivatives: Meperidine, Ketobemidone, SAR. 4-Anilinopiperidine derivatives: Fentanyl, Sufentanyl, Alfentanyl, Remifentanyl. Diphenylpropylamine derivatives: Methadone, Methadone metabolism. Opioids with a dual mode of action: Tramadol, Tapentadol. Opioids as antidiarrheal: Loperamide, Diphenoxylate. Naltrindole and development of bivalent ligands for opioid receptors: MDAN-21.

 

Antihypertensive drugs. Physiopathological aspects and pharmacological treatment of hypertension. Drugs active on the renin-angiotensin system. Angiotensin-converting enzyme inhibitors (ACE inhibitors): general structure, SAR, therapeutic indications. Captopril, Enalapril, Lisinopril, Fosinopril, Ramipril, Delapril, Zofenopril, Quinapril, Benazepril. Synthesis of Enalapril. Angiotensin II receptor antagonists: general structure, SAR, therapeutic indications. Development of Losartan, Valsartan, Irbesartan, Candersartan, Telmisartan, Olmesartan. Renin inhibitors: Aliskiren.

Structural organization and classification of calcium channels. Calcium antagonists: Diltiazem, Verapamil; Dihydropyridines: general structure, SAR, therapeutic indications. Nifedipine, Felodipine, Isradipine, Nitrendipine, Amlodipine, Nicardipine, Lacidipine, Lercanidipine, Manidipine, Nisoldipine. Synthesis of Nifedipine.

Beta-blockers and alpha1-antagonists: general structure, SAR, therapeutic indications (see chapter: Drugs acting on the adrenergic system).

Endothelin receptor antagonists: Bosentan, Ambrisentan.

 

According to the RDA, Art. 12 - University Training Credits (CFU), the standard 25-hour workload of the student, corresponding to one credit, may include:

a) 7 hours dedicated to lectures or equivalent teaching activities and the remainder to individual study;

b) at least 12 and no more than 15 hours dedicated to classroom exercises or equivalent supervised activities (lab practice) and the remainder to personal study and reworking.

1. G.L. PATRICK, Chimica Farmaceutica, III Edizione italiana, EdiSES, Napoli, 2015. ISBN 978-88-7959-845-3
2. T.L. LEMKE et al., Foye's L'essenziale, Principi di Chimica Farmaceutica, I Edizione italiana, Piccin, Padova, 2017. ISBN 978-88-299-2867-5
3. A. GASCO, F. GUALTIERI, C. MELCHIORRE, Chimica Farmaceutica, seconda edizione, CEA, Rozzano (MI), 2020. ISBN 978-88-08-42026-8
4. G. COSTANTINO, G. SBARDELLA, Chimica Farmaceutica, EdiSES, Napoli, 2024. ISBN 978-88-3623-1522
5. V. F. ROCHE, S. WILLIAM ZITO, T. L. LEMKE, D.A. WILLIAMS, Foye's Principi di Chimica Farmaceutica, VII Edizione italiana, Piccin, Padova, 2021. ISBN 978-88-299-3153-8
6. Lecture notes and slides.

The learning assessment consists of a written test including multiple choice questions and open-ended questions.

The test is aimed at evaluating the level of knowledge and understanding of the basic concepts of Medicinal Chemistry, of the fundamental aspects concerning the design, synthesis, mechanisms of action at the molecular level and the structure-activity relationships (SAR) of the classes of drugs illustrated during the course.

Furthermore, the test aims to evaluate the ability to apply acquired knowledge to problem-solving, use appropriate scientific terminology, compare the structures of active principles to deduce their properties and potential metabolic pathways, and illustrate and discuss possible industrial synthetic strategies.

 

The final grade is expressed out of thirty (trentesimi) according to the following grading scale:

Fail (Non idoneo): Significant deficiencies in knowledge and understanding of the topic; irrelevant analytical skills.

18-20: Modest knowledge, evident imperfections, barely sufficient analytical skills.

21-23: Just above sufficient knowledge, fair analytical and synthesis skills.

24-26: Good knowledge, good analytical skills, and logical argumentation.

27-29: More than good knowledge, notable synthesis skills, appropriate use of standard references.

30-30 cum laude (30-30 e lode): Excellent knowledge, outstanding synthesis skills, and significant critical insights.

 

To take the exam, students need to book online at Portale studenti of Università di Catania webpage (www.unict.it). Booking list is opened about fifteen days before the exam date; the exam schedule can be found at the following link: http://www.dsf.unict.it/corsi/lm-13_ctf/calendario-esami. 

 

Learning assessment may also be carried out on-line, should the conditions require it.

 

Information for students with disabilities and /or SLD

To ensure equal opportunities and in compliance with current laws, interested students may request a personal interview in order to plan any compensatory and/or dispensatory measures based on educational objectives and specific needs. Students may also contact Prof. Santina Chiechio (santina.chiechio@unict.it) in her capacity as the CInAP (Center for Active and Participatory Inclusion – Services for Disabilities and/or Specific Learning Disorders; https://www.cinap.unict.it/content/referenti) representative for the Department of Drug and Health Sciences.

Examples of open-ended questions:

 

·        In the catalytic site of Acetylcholinesterase, what are the amino acids involved in the hydrolysis of Acetylcholine? Illustrate the mechanism;

·        Write the structural formula of Morphine indicating its chiral centers and the relative configurations (R or S);

·        Write the general structure of benzodiazepines and describe their main SARs;

·        Describe the synthesis of Fluoxetine;

·        Describe the structural characteristics common to hERG potassium channel blockers and the structural modifications that can be made to a compound to reduce the interaction with this biological target.

 

Examples of multiple choices questions

 

Dextromethorphan is used:

1. in the treatment of severe pain 
2. as an antidiarrheal 
3. to reduce addiction in drug addiction substitution therapy 
4. as an antitussive

 

Esmolol is a:

1. short-acting beta-adrenergic
2. antagonist long-acting beta-adrenergic 
3. antagonist short-acting beta-adrenergic
4. agonist long-acting beta-adrenergic agonist

 

Citaprolam is a serotonin reuptake inhibitor. Which of the following statements is true? 

1. it is also marketed as a single enantiomer in the R configuration
2. it is also marketed as a single enantiomer in the S configuration 
3. Citaprolam does not have chiral centers 
4. it also acts as a potent norepinephrine reuptake inhibitor